Principal Scientist of AI-Driven Protein design Job at Innovent Biologics, Palo Alto, CA

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  • Innovent Biologics
  • Palo Alto, CA

Job Description

Job Responsibilities

  1. AI/ML-Driven Design: Lead the team in developing or utilizing state-of-the-art machine learning tools for de novo protein or antibody design; spearhead the development of novel antibody discovery methodologies.
  2. Computational Tool Development: Develop or leverage open-source models, train them using internal datasets, fine-tune models as needed, and perform multi-parameter optimization of antibodies (e.g., affinity, selectivity, half-life, drug-like properties).
  3. Cross-Functional Collaboration: Work closely with antibody engineering, structural biology, and therapeutic teams to translate AI predictions into physical molecules and effectively conduct wet lab validation.
  4. Technology Exploration: Track breakthroughs in AI/ML and computational biology; lead external collaborations (e.g., with academia/AI companies) to build Innovent’s AI development ecosystem.
  5. Strategic Leadership: Develop the team’s AI/ML technology roadmap, cultivate computational biology talent, and drive innovative molecular entities into the pipeline.

Qualifications

1.Education & Experience:

  • Ph.D. in Computational Biology, Bioinformatics, Computer Science, or a related field, with a focus on AI/ML applications in life sciences; minimum 3 years of relevant experience.
  • Experience in de novo protein design and antibody engineering is preferred.
  • Prior success in leading AI/ML projects within pharmaceutical, biotech, or research institutions is highly desirable.
  • Experience managing and developing ML/AI scientist teams; excellent communication skills to convey complex technical concepts to cross-functional colleagues; proven ability to collaborate effectively in interdisciplinary teams.

2.Technical Expertise:

  • Deep knowledge of protein structure analysis, antibody biology, and therapeutic antibody design principles.
  • Proficiency in protein modeling and structural analysis software (e.g., Rosetta, PyMOL, MOE, or equivalents).
  • Extensive experience with generative AI; hands-on practice with cutting-edge ML tools (e.g., AlphaFold, RFdiffusion, ProteinMPNN, or similar models).
  • Core competency in developing and implementing ML algorithms; proficiency in Python/R/C++ and deep learning architectures (e.g., CNNs, RNNs, Transformers).
  • Expertise in advanced ML models for protein modeling, including generative models (diffusion, flow matching), language models (Transformers), multimodal learning, geometric deep learning, and graph representation learning.

3.Results-Driven:

  • Published original research on AI applications in biomedicine in top-tier journals/conferences.
  • Delivered presentations on AI/ML topics at conferences on behalf of companies or research institutions.

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